add mirt mirtCAT to ai-box

Change-Id: I978f0ddd571629db0b52e326ba8b4851943fef39

ai-box/Dockerfile

@@ -19,6 +19,8 @@ MAINTAINER xt
 
 ENV PYTHONUNBUFFERED 1
 ENV TZ Asia/Shanghai
+# to fix install.r mirt
+ENV LIBRARY_PATH /usr/lib/gcc/x86_64-linux-gnu/8
 
 COPY sources.list /etc/apt/sources.list
 COPY requirements.txt ./
@@ -26,8 +28,21 @@ RUN apt-key adv --recv-keys --keyserver keyserver.ubuntu.com 40976EAF437D05B5 \
     && apt-key adv --recv-keys --keyserver keyserver.ubuntu.com 3B4FE6ACC0B21F32 \
     && apt-get update \
     && apt-get install -y --no-install-recommends --allow-unauthenticated \
-         bzip2 gcc libmysqlclient-dev r-base=3.5.1-* r-base-dev=3.5.1-* \
+         bzip2 gcc libmysqlclient-dev \
+         littler r-cran-littler r-cran-stringr \
+         r-base=3.5.1-* r-base-dev=3.5.1-* r-recommended=3.5.1-* \
     && pip install --no-cache-dir --trusted-host mirrors.aliyun.com \
-         -i http://mirrors.aliyun.com/pypi/simple -r requirements.txt
+         -i http://mirrors.aliyun.com/pypi/simple -r requirements.txt \
+    && echo 'options(repos = c(CRAN = "https://cloud.r-project.org/"))' >> /etc/R/Rprofile.site \
+    && echo 'source("/etc/R/Rprofile.site")' >> /etc/littler.r \
+    && ln -s /usr/lib/R/site-library/littler/examples/install.r /usr/local/bin/install.r \
+    && ln -s /usr/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
+    && ln -s /usr/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
+    && ln -s /usr/lib/R/site-library/littler/examples/testInstalled.r /usr/local/bin/testInstalled.r \
+    && install.r docopt \
+    && install.r mirt \
+    && install.r mirtCAT \
+    && rm -rf /tmp/downloaded_packages/ /tmp/*.rds \
+    && rm -rf /var/lib/apt/lists/*
 
 CMD [ "/bin/bash" ]